Sunday, February 17, 2013

UPDATE on the CRBCM BLOG

UPDATING YOU, TO DATE OVER 10,000 HAVE SEEN OUR BLOG!
 

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THIS BLOG OFFERS A UNIQUE PERSPECTIVE , THAT IS AT TIMES UNDER THE HYPOTHESIS RUBRIC, IT SOMETIMES CHALLENGES COMMON UNDERSTANDING.  PARTICULARLY AS IT PERTAINS TO THE NOTION OF LAWS OF NATURE, AND LOGICAL CONCLUSIONS ON TREATMENT STRATEGIES.   OUR AUDIENCE IS CHALLENGED IN VARIOUS WAYS!

TTP

THROMBOTIC THROMBOCYTOPENIC PURPURA (HYPOTHESIS CONTINUES)

Here is the example of a metastatic mechanism going bad when it hits the right ADAM.  Remember that ADAM are made of 2 basic domains, one an integrin and one a metalloproteinase domain.  The Metalloproteinase enters the Flippase-floppase (or sometimes scramblase)-like structure and is destined to be rejected outside, the Integrin is sent inside the cell.
Metalloproteinases are sent outside and attack collagen-like molecules to open the way to cell migration and allow Metastatic processes to move forward.  However, the cell membranes have a collagen-like structure, too.  So potentially the released Metalloproteinases could attack the cell.  The cell is not stupid and knows what metalloproteinase it has put out.  So it shields itself with Inhibitors and Decoy receptors from that specific metalloproteinase and the cell goes about its migration.

2 conclusions:

1. Insufficient inhibitors and decoy receptors to Metalloproteinases (and others such as Hydroeicosatetraenoic Acid) will have devastating effects.  If genetically the inhibitors are insufficient, and metalloproteinases are expressed massively, and this happens at the endothelial cell, massive and extensive destruction of endothelial cells throughout the body happens, exposing collagen like structures of the blood vessel walls.  This of course trigger extensive activation of platelets and the Thrombosis of TTP-like syndrome.  So in TTP, it is the inhibitor that is lacking.  (ie Von Willebrand cleaving protease inhibitors have also been cited).  And plasmapheresis removes the the Metalloproteinases (and microbial Antigens/toxin when relevent), stopping the onslaught.

2.What is in the Integrin domain is critical, in ADAM-17, the integrin domain is occupied by TNF-alpha, converting enzyme (TACE) which will free and activate the devastating Tumor Necrosis Factor.  Released massively, TNF can not only induce Apoptosis like certain other Cyclins (interleukine and Interferon ), but also leads directly to NECROSIS.  A massive uncontrolled septic-like syndrome kills rats after infusion of TNF.

ADAM 10, the disintegrin there gives you Amyloid structures of Alzheimer's.  TO BE SHORT, PICK THE ADAM AND SEE THE CONSEQUENT DISEASE ON YOUR OWN!

ADAM! A FLIPPASE, FLOPPASE AND/OR A SCRAMBLASE-LIKE MOLECULE !

Saturday, February 16, 2013

HYPOTHESIS : WHERE DO CYCLINS COME FROM?

There is increasing evidence that Cyclins are integrins and so are Tumor growth factors, Tumor Necrosis factors, interleukins and interferons.
All these are membrane proteins with a particularity to be released from Metalloprotease and related adhesion molecules depending on the nature of stimuli.  The discovery and description of ADAMs as type I membrane protein containing Metalloproteinase and an integrin domain locate the growth factors and Cyclins squarely at the membrane  (surface and reticulum membrane).  These proteins, once released, go straight to the Nucleus to unveil their might by activating transcription factor.  In their track to the nucleus they can amplify and activate signal transduction pathways as well as either molecules. The cyclins find cytoplasmic and protein substrates (mostly enzymes)  which have their specific domains and link to the site to activate them most of the time, changing their shapes so as to expose hidden electrons or atomic groups (such SH) to cause downstream chain activation.

Now as the pathway unfolds at light speed (or electronic speed) it may overwhelm the cell, protection has to be assured to hide death domains (which also are integrins and therefore at the membrane) and pathways to Apoptosis.  Protection at the membrane seems to be offered by the INK while the CIP/Kip.  But deep in the cell are the Bcl-like proteins. The CIP/Kip seems to work like Decoy specific proteins since the have Cyclin domain to stop them from stimulating their respective CDKs (Cyclin dependent Kinases).  Some CDKs need 2 or more different stimulations to accomplish their deed. And with the number of stimulations comes the consequent activation of various substrates.  The Retinoblastoma substrate governs the G1 progression phase in the cell cycle, but it needs at least 2 activations, first by Cyclin D followed by activation by Cyclin E in order for it to free E2F that light up tarnscrptions genes which control the path to S-phase.  This Cyclin E also activates processes leading to Histone Biosynthesis, Centrosome activity and DNA replication.  And in fact, Cyclin E is the one that leads to gene instability that characterize many triple negative breast cancers

(E2F AND CYCLIN E, ARE POWERFUL TARGETS FOR CANCER CURE)

One of the CIP/Kip(s) is the P21 which plays a role in the cell cycle arrest due to P53 activation.
I should note that the Kinase itself may be mutated.  CDK4 is mutated in Melanoma, it renders the INK4 protein unable to occupy its domain and therefore is free to affect the nuclear transcription factor.  Therefore the solution is to increase the ligand to INK4 so as to increase its ubiquitination and and degradation through the proteasome (Ipilimumab/CTLA 4 in T cell/ does not do this unfortunately, so there is more room for you to research).  YES, LIKE FOR MERCEDES, WE NEED THE E CLASS OF PROTEINS TO FURTHER UBIQUITINATION.  A MUTATION IN E CLASS (WHICH INCLUDES MDM2) WILL BE BAD IN MELANOMA!

Suffice is to show that what starts at the membrane moves quickly to the nucleus in a milli-milli second in a flash and turn the life of the host around!

It is worth noting that not only Cyclins can be blocked from entering the Nucleus where they trigger transcription factor formation, but sometimes the Decoy (Cip/Kip) is stopped from entering the nucleus and cannot stop Cyclins which have entered the nucleus: this happens in breast cancer (p27 mislocation)
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THE INTEGRINS, PRESUMED SOURCE OF CYCLINS!

NEWS FROM EXJADE  SURVEYS

"Exjade is dosed based on weight with an initial recommended dose of 20 mg/kg/day
 with later adjustments every 3 – 6 months in steps of 5 or 10 mg/kg/day as needed
 to control serum ferritin levels.  In patients at a dose of 30 mg/kg/day with serum ferritin
levels persistently above 2,500 μg/L, doses up to (but not beyond) 40 mg/kg/day may be
 considered.
In an open-label, noncomparative trial of efficacy and safety of Exjade, 184 patients
 (including 47 MDS patients) were treated for up to 1 year at doses of 5, 10, 20,
or 30 mg/kg/day based on baseline liver iron content (LIC).  The reduction in absolute
LIC from baseline to end of study at 1 year was 4.2 mg-Fe/g-dry weight.
In the primary study of Exjade efficacy – an open-label, randomized, active comparator
 study vs.deferoxamine, 586 patients with β-thalassemia and transfusional hemoiderosis
 were randomized with 296 patients receiving Exjade at doses of 5-30 mg/kg/day and
 treated up to 1 year.
 The following figure summarizes the changes in liver iron content and serum ferritin between
 baseline and end of study at 1 year for Exjade patients at doses of 5, 10, 20, and
30 mg/kg/day."






"Gattermann et al. [Haematologica, 2012; 97(9): 1364-1371] have recently published
 data on the impact of chelation therapy with deferasirox (Exjade) on hemoglobin levels,
 platelet counts, and neutrophil counts in patients with transfusion-dependent MDS.
To be included in the trial, patients must have:
  1. Been diagnosed with iron overload (serum ferritin > 1,000 μg/L or LIC > 2 mg-Fe/g-dw)
  2. Had a history of multiple blood transfusions (> 20 transfusions or > 100 ml/Kg
  3.  of RBCs)
  4. Not be on a concomitant disease modifying agent for MDS (e.g., Vidaza, Dacogen,
  5.  Revlimid)
Recruited patients were treated with deferasirox for 1 year of active treatment – there
was no control arm in the trial design.  The following table summarizes the main study findings:"
Erythroid analysisPlatelet analysisNeutrophil analysis
Eligible patients24710050
Inclusion criteriaPre-treatment HB < 11 g/dl, OR RBC transfusion requirements > 4 units
per 8 weeks
Pre-treatment platelets
< 100 x 109/L
Pre-treatment ANC
< 1.0 x 109/L
Definition of responseHB increase > 1.5g/dL,
OR reduction of ≥ 4 RBC transfusions per 8 weeks
Increase > 30 x 109/L for patients below 20 x 109/L, or > 100% increase> 100% increase, AND absolute increase
> 0.5 x 109/L
Response rate21.5%13%22%
Median days to response109169226
Mean actual deferasirox dose, mg/kg/day~19.3~19.5~18.8

DRUGS IN THE PIPELINE PER "ONCOLOGY LIVE"

1. POMALIDOMIDE APPROVED FOR CML (EVEN T315I POSITIVE),  A.L.L.   PHILADELPHIA POSITIVE

2.T-DM 1 FOR HER-2 POSITIVE BREAST CANCERS.

3.APF530   FOR ACUTE AND DELAYED CHEMOTHERAPY INDUCED VOMITING

4 LYMPHOSEEK, TECHNETIUM, WILL SEEK SENTINEL NODES 

5. CHEMOSAT FOR OCULAR MELANOMA METASTATIC TP THE LIVER, MELPHALAN BASED

6. TIVOZANIB ANTI-VEGF FOR METASTATIC RENAL CANCERS

7 AFATINIB  FOR ADVANCED LUNG CANCER EGFR, ERB4 INHIBITOR

8. DABRAFENIB ANTI-BRAF IN MELANOMA

9. TRAMETINIB -ANTI MEK FOR ADVANCED MELANOMA

10 RADIUM-223 DICHLORIDE ALPHA PARTICLE EMISSION,  IN BONE METASTASIS IN PROSTATE CANCER
ETHICAL ISSUES IN CANCER THERAPY USED IN CLINICAL TRIALS.
----------------------------------------------------------------------------------

In desperate times and in situations where there is no known standard therapy left or existing, patients are involved in various phases of clinical trials and off label use of medications occurs.  One difference between off label use with On label use is that early on, people had been willing to put their life at risk, and consented to participate in a clinical trial aimed at proving a point or concept.. These trials often are with a limited scope of objectives to reduce specific biases. But once proof of concept is established, can we extrapolate  these findings to other parallel situations?  Or do we need to do clinical trials even though similar situations, concepts, mechanisms and possible responses apply?  Several scenarios can be asked:

1. If A leads to B and B leads to C, can we conclude without a trial that A leads to C?
2. If A=B and B=C, can we conclude that A=C ?
3. If A-B=C can we conclude the A-C=B?
4. If A using B gets C, therefore A using C gets B?

While some of the scenarios are clearly true, some are not fully true and some conclusions are completely wrong. And resulting consequences could be devastating. The variables are what happens between the letters. And the intensity of the quality of the conclusion depends very much on these various variables.  Ethicists around the world struggle with these Issues all the time.

When it comes to Humans, the variables become endless: Gene differences, gender, age, previous exposures, set of circumstances, state of main organs, and susceptibilities are just a few known and unknown variables.   Reaction to something known will depend on the mentioned variable.  And even though the drug and side effects are known, these variables still question or challenge us because they can change the outcome.  The safety or acceptability of the outcome determines or influences the ethical nature of the outcome.  The moral nature of the outcome is another dimension that is part of the Ethical decision and is a tall order that also nees do be met.
------------------------
Case in point:

3 decades ago a young researcher was working with a drug that was banned because pregnant women who took the drug had babies with short limbs. The drug was Thalidomide of course.  He was trying to know why this drug led to this calamity.  History taught us that restricted growth of blood vessels in the embryo was one of the main reasons; of course we know now.  But as he worked with Thalidomide, he fell ill.  He was diagnosed with Myeloma.  He wanted to learn more about his disease and soon learned about the pathways in Myeloma and quickly concluded that based on what he knew about Thalidomide, it could help in Myeloma.  He also knew that it would take time for the drug manufacturer to allow the use of the drug for his condition.  Off label use was authorized by someone in this desperate situation and the rest is history!
Now that we know the drug used is effective, was it ethical to try or allow the use of thalidomide without having the results of a clinical trial?  This situation judged today brings out the notion that what is not ethical today may not be unethical tomorrow. The ethical nature of a practice is relative to time, place and culture and? you think it, it's good!

Case in point 2:

Dr Maurie Markman commented on a case about the possible use of Bexarotene, a medication approved for treatment of Cutaneous T-cell lymphoma, in Alzheimer dementia.  Based on what target and mechanisms, one may conclude it can work in this disease.  But a physician says "NO" to recommending it off label.
Who should decide, the desperate, but informed patient, or the Doctor?
And what are the possible reasons this Doctor makes that decision?
At what threshold is a trial needed to allow us to conclude that the OFF-LABEL USE IS WORTH WHILE? IS OUR IGNORANCE ENOUGH OF A REASON TO NOT TRY SOMETHING CONSENTED? IS AN ETHIC PANEL ENOUGH PROOF TO ALLOW SUCH A USE?
Or both patient consent and an ethical panel decision need to reach the threshold together?
YOU TELL ME!
SHOULD WE LEARN SOMETHING FROM THE FIRST CASE? 


Friday, February 15, 2013

ACTIVITY AT CRBCM

*Steady stream of patients good for business,
but Medicare and Medicaid payments still not coming in
and they accuse physicians for not wanting to take these patients;
but how can you dedicate your time fully to the complexity of taking care of patients without being paid!
It is just a shame!

*we are meeting this coming week the UTEP biostatistic lab for possible Collaboration on future research projects.
The Dept of Defense is calling for submissions. Please Rush and participate!  Closing door Feb 27, 2013.

*There are only 2 PET scan Machines in El Paso. Population 750,000, 4th city in Texas!   Price range per study from $1,500 to 4,000 according to your insurance!  Investors contact me. I will help!  Even the University Medical Center does not have (one from sure source)!

*The Great State of Indiana is UP! we will be traveling there tomorrow to take the Pulse!

*Survivorship program for cancer survivors in Indiana, coming soon!  We keep working Hard!




JOIN THE CLINICAL TRIAL
A PHASE III OF ONARTUZUMAB (METMAB) WITH TARCEVA AGAINST TARCEVA ALONE FOR ADVANCED OR METASTATIC LUNG CANCER!
THIS IS A FIRST LINE TREATMENT
NCT01456325, OAM4971g
LBK-1 GENE AND CAVEOLIN DISRUPTION

Some women have a clear tendency to have Multiple calcifications or  Microcalcifications in the Breast.  And we know that clusters of calcifications found on mammograms, call for a Biopsy of the involved area.  Disruption of the shape of the epithelium is known to be associated with Mutation of LBK-1 as stated in our previous blog.

GUANGWEN CAO ET AL STATED:
"Caveolin-1 (Cav1) is a major structural protein of caveolae, small membrane invaginations of the cell membrane that play a cell and context-dependent role in potocytosis, transcytosis, molecular transport, and signal transduction. 1,2 Specific molecules from four major signaling pathways have been detected in caveolae, G-protein mediated signaling, calcium-mediated signaling, tyrosine kinase/mitogen-activated protein kinase signaling, and lipid signaling. Caveolae appear to be a focal point for compartmentalizing, organizing, and modulating signal transduction activities that begin at the cell surface and Cav1 may function not only as a structural molecule but also to modulate the function of signal transduction pathways. 2'

CALVEOLIN-1 HAS BEEN ASSOCIATED WITH URINARY STONES.

Are disruptions at LBK-1 and Cav-1 associated with benign multiple calcification in the breast?  And is their presence a predictor of DCIS and/or early breast cancer?
HURTHLE CELLS:  Thyroid MALIGNANCY SHOULD BE A PART OF THE VON HIPPEL LINDAU SYNDROME.
It all makes basic sense.  There are significant disturbances in the Mitochondria of cells of patients with VHL syndrome.  These disturbances involve Mitochondrial DNA and Cytochrome Oxidase.  Multiplication of Mitochondria results, with the abnormal content giving the appearance of "Hurthle" cells!  This just hit me as I was looking into a new case of Hurthle cells, the patient had a History of VHL!

Curcio-Morelli et al. (Harvard institute) also described how VHL protein affects Thyroid hormone activation through de-Ubiquitination of regulating enzymes.
RANDOM NEWS

*Data released from the CDC 's Office on Smoking and Health were rather sobering.   between 2010 and 2011, the prevalence of Smoking did not drop despite a 58% quitting attempt rate recorded. People just smoke a little less as the proportion of those who reported smoking less than 30 packs per year dropped. In the United states, 19% of the Adult population smoke despite all the warning. This lead to 443,000 or half a million deaths related to smoking related illnesses in the United States alone (latest Jama pg 539).  Of these, approximately 165,000 will die of lung cancer (37%).
Carcinogens in cigarettes, ability to detoxify oneself, and presence of Estrogen receptor Beta in the lung seems to contribute.  Amount, length,and nature  of smoking exposure are recognized variables and influence the type of cancer found.    exposure to Radon, Arsenic, Chromium and others such as Nickel have also been implicated.  Host variations include Cytochrome P450, Glutathione S transferase and DNA repair enzymatic system.  Deficiency of Vitamin A, C beta-carotene, fruit and vegetable consumption have all be recognized to be associated with lung cancer risks.

Kidney, bladder, uterine cervix, head and neck cancers have all been linked to smoking.

*Up to 75% of patients with Bladder Cancer who are of European descent may have rs2294008, making this a significant Biomarker to be understood and targeted.

* A device approved by the FDA can recognize existence of cancer cells at the Margins of surgery to help the surgeon delineate his surgical Margin.  The Margin Probe uses an eletromagnectic recognition system to identify a "signature" of malignancy to tell the presence of Malignant cells.  This device can tell 3 times better reportedly where the cancer tissue ends!

*OFF AGAIN, ON AGAIN, MULTIVITAMIN SUPPLEMENTATION IS GOOD FOR YOU TO REDUCE RISK OF CANCER PER THE PHYSICIAN HEALTH STUDY II DESPITE THE LACK OF SIGNIFICANT DIFFERENCE IN MORTALITY.  THE DIFFERENCE WAS IN NUMBER OF CANCERS.  

Thursday, February 14, 2013

RANDOM NEWS with updates for Letrozole

*BIG 1-98 showed that LETROZOLE was more effective in post-menopausal patient with any histology of breast cancer that is ER positive and Her-2 Negative, with the effect being greater in lobular type of Carcinoma.  And in Luminal B versus Luminal A.

* In HER-2 positive, one year Vs 2 Years.
"2 year long treatment not recommended",
finding of the HERA trial remains the standard of care.

In the study of 6 months Vs 12 months of Herceptin, there was a trend toward better results with 12 months also statistically no difference was detected.

*In Early Breast cancer, High Baseline of Vitamin D level was a predictor of 3 things:
1. better prognosis
2. low risk bone relapse
3. better outcome with use of Zometa.

recommendation is to measure Vit D at diagnosis and to replenish it!

*In triple negative breast cancer, the disease would be amenable to new type combinations of medications such as
A/  Cisplatin /PARP (olaprib) and Vandetanib (EGFR/VEGF).
B/  Cisplatin/PARP inhibitor and   Vorinostat (Histone deacetylase inhibitor)
C/  Androgen Inhibitors and MTOR

*PD 0332991, an oral Cyclin dependent Kinase (CDK 4/6) inhibitor added to Letrozole  increased the progression free from 7.5 months to 26.1 months.  This is an impressive performance if confirmed. 
 *PIM-1 may be a surrogate of c-MYC  amplification, and is being targeted.

* Routine Breast MRI still not recommended

*32mg IV Ondansetron  can cause Arrhythmia and has been withdrawn.
GENES INVOLVED IN PERIPHERAL NEUROPATHY

Many chemotherapy and target therapy drugs leave behind devastating peripheral neuropthy.  Most prominently mentioned are Cisplatin, Vincristine, Navelbine Taxanes, Thalidomid, Velcade, Revlimid to name a few.  The level and extent of the induced Neuropathy varies with the specific drug.
We try to look into the genetic abormalities that underly some of the common peripheral neuropathies to see if a common thread may be picked up to explain the many variation in presentation, and whether there would be a way to predict who is the most susceptible patient given a known drug.

A preliminary review revealed the followng genes for further observation:

1. PMP22:     (Peripheral Myelin Protein 22) located on chromosome 17, this gene and related  in an essential component Myelin the covering sheath of the neuronal axon.  Parallel to Histone covering the gene, Myelin is not only there to cover the Axon.  It participate in its development, growth and function.  It helps maximize the neuronal function by increasing the efficient of the motor and sensory traffic.    Death of the neuron follows generally Myelin degeneration particularly in trauma.
Disease results generally from Mutation in the genes but also from alterations in the many regulators of this genes (which include P53, AP-1, and Sox 9 and 10, Luciferase and ERG-2).  Frame shift Mutyation leads to many clinical Syndromes which have been well Characterized.
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2. MPZ: this is the major component (in number) of the Myelin sheet, these proteins make a glue like substance that link the Neuron to Schwann cells, has a transmembrane  formation allowing easy transfer of signals, and in effect maximizing axonal transduction.   Myelin Protein Zero is linked to PMP22.
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3.GjB-1
4. NEFL
5. GAN
6, dynactin GENE
7. LITAF/SIMPLE
8. RAB-7
9. MFN-2
10. GDAP-1
11.EGF-2
12.GARS
13.MTMR
14.CMT4B2
15.KIA-A1985
16.NDRG-1
17.PRX  Gene maker of Periaxin, a protein protecting and maintening Myelin
-------------------------------------------------
18.DCTN-1
--------------------------------------------------------------------------
19.SPTLC-1 : ENCODE FOR SILENCING ENZYME OF LIPID HOMEOSTATSIS
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20.IKBKAP
IKBKAP (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein) is a human gene that provides instructions to make the IKAP protein, which is found in a variety of cells throughout the body, including brain cells. Although the exact function of the IKAP protein is not clearly understood, it probably plays a role in transcription, which is the process of making a blueprint of a gene for protein production. Researchers have identified the IKAP protein as part of a six-protein complex (called the holo-elongator complex) that interacts with enzymes necessary for transcription. The IKAP protein probably performs other functions in the cell as well, such as responding to stress. Its homolog in fly (D-elp1) has RNA-dependent RNA polymerase activity and is involved in RNA interference.[1]
The IKBKAP gene is located on the long (q) arm of chromosome 9 at position 31,wikipedia:  

REMEMBER MUTATION HERE CAUSED FAMILIAL DYSAUTONOMIA, A MOVEMENT DISORDER.  THIS PARTICIPATE IN THE CYTOSKELETON!
------------------------------------------------------------------------
21.NTRK-1  :  In Neuroblastoma, The Neurotropic Tyrosine Kinase Receptor 1 is good for you
                          Receptor 2 is the "bad Guy".  There are other NTKR of undefined implications
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ASCORBIC ACID
ANTI-PROGETERONE
INJECTIONS OF NEUROTROPHIN 3.



GENETIC CHANGES IN HURTHLE CELL CANCER

1.  RAS AMPLIFICATION, SEEN IN 40% OF CASES
2.  RET, PREDICTIVE OF SPREAD OF DISEASE, PRESENCE OF RET/PTC REARRANGEMENT
(NEGATIVE RET EXPRESSION SPRESD MORE)
3.OVEREXPRESSION OF P53
4. LOSS OF E-CADHERIN
5. AMPLIFICATION OF MYC
6. INCREASED TGF ALPHA
7. INCREASED INSULIN LIKE GROWTH FACTOR
8. INCREASED THYROTROPIN RECEPTOR AND ALPHA SUBUNIT OF G PROTEIN
9. OVEREXPRESSION OF P27 AND CYCLIN D3
10. PRESENCE OF GRIM 19

WATCH TRABECULAR PATTERN
WATCH FOR LEVEL OF INVASION OF BOTH CAPSULE AND BLOOD VESSEL

LOOK FOR  FAMILY HX
                     MASS, PAIN, DYSPNEA DYSPHAGIA, CHOKING SPELLS, HOARSENESS,
                     HORNER SYNDROME

OBTAIN
TSH, T3,T4, FREE T4
ANTI-PEROXIDASE ANTIBODY
ANTITHYROGLOBULIN ANTIBODY
THYROGLOBULIN LEVEL PARTICULARLY POST SURGERY
THYROID UPTAKE AND SCAN
U/S TO DETECT ADENOPATHY
OCTREOTIDE SCAN OR MORE RECENTLY PET SCAN

5 YEAR SURVIVAL  8-10%
10 YEAR SURVIVAL 18-20 %
10 YEAR SURVIVAL  30%

TREATMENT
1.SURGERY
2. IODINE BASED RADIATION
3. SOMETIME STANDARD RT
4. REPEAT IODINE RT FOR RECURRENCE AFTER UPTAKE BOOSTER
5. ROLE OF ANTI-VEGF +/- TAXANES

Wednesday, February 13, 2013

STAT-1 DEPRESSION COULD PREDICT SUSCEPTIBILITY TO  HISTONE DEACYLASE AND KILLING THROUGH UPREGULATION OF Fas PATHWAY.

We have recently presented a case of a 38 YOF diagnosed with an unresectable Angiosarcoma
Her tumor was positive for factor 8, CD31, CD34 ad Ki-67.   This immunostaining profile was used to support the reading of the pathologist,  CD31, a platelet adhesion molecule (PECAM-1) is extensively found on the endothelial cells.  But the presence of factor 8 raises the possibility of Interferon Regulated Factor 8 (IRF8),   Therapeutically this would be interesting because not only it raises the possibility of Using Interferon gamma in this woman, but also Histone Deacetylators.

Our question, DOES EXPRESSION OF FACTOR 8 SUGGESTS SUSCEPTIBILITY TO HISTONE DEACETYLASE AND KILLING THROUGH UPREGULATION OF Fas IN PATIENT WITH STAT-1 DEPRESSION.

IT IS ESTABLISHED THAT INTERFERON HAS SOME ACTIVITY IN ANGIOSARCOMA, AND SO DOES ALL ANTI-VEGF AND POTENTIALLY ALL ANTI-MEK
ACUTE MYELOID LEUKEMIA : SOME NOTES FROM DR FREDERICK APPELBAUM COMMENTS

* classification under the FAB was abandoned because it did not give prognosis information

* 4 groups based on Cytogenetics
1. No significant Cytogenetic abnormality : considered the INTERMEDIATE GROUP
2. Unfavorable group with 5q - 7(Monosomy)
3. Favorable group Inv 16, (15,17), (8,21)
4. Unclassified

The favorable have 55% 5 Year survival
Intermediate have 38% 5 year survival
Unfavorable had 11% 5 year survival

ADD NPM1 as good prognosis
ADD CEBPA as good
BUT  FLT-3 as bad despite favorable basic category
C-KIT positive is also bad in Adult only

other cytogenetic of interest N-RAS, NPM and IDH1 Mutation

15 other Mutations for our BUFF in genetic

KIT          MLL             CBL       PTEN      JAK2         DNMT3A      EZHZ      TET2      WT-1
IDH-1      N-RAS        P53         RUNX-1     ASXL-1    PHF-6
--------------------------------------------------------------------------------------------------
IF YOU FINISH LOOKING AT THE 15
WELL LOOK ALSO   ERG   MN1    EVI-1   BAALC   CD34
---------------------------------------PLUS MICRO--RNA, METHYLATION

ADD TO DNA SEQUENCING , TRANSPTOSOME SEQUENCING TO SEE FURTHER


ELN 2012
CATEGORIES OF AML

1. favorable include Inv 16,( 8,21), NPM1, CEBPA and wild type FLT-3

2. Int-1   NPM1 Mutated and FLT3 Mutation
3.  int-2   t(9,11) and NOS
4. Unfavorable   inv 3  (3,3)   t(6,9)   -5  -7  17p  and complex abnormalities

remember good or favorable is not good or favorable anymore if noted after chemotherapy for another primary.

----------------------------------------------------------------------------------

In all patients, obtain  (I will send you an angry letter if H&P not completed in EMR!) OK!

1.  CBC DIFF and Comprehensivve Metabolic panel
2. Uric acid level ---not high, start Allopurinol
                           ---high start Rasburicase
3.PT and PTT if DIC start ATRA
4. Bone marrow Biopsy
5.Immunophenotyping
to detect the 1% of Mixed phenotype which is of poorer prognosis
and to be able to detect persistence of disease with PCR better accomplished through this method
6.Cytogenetic   which should include CEBPA, FLT-3, and NPM-1, C-Kit

7.HLA typing NOW  NOW   NOW!
-------------------------------------------------------------------------

Please note  age (65) and comorbidities as you ponder if patient can sustain high dose treatment
----------------------------------------------------------------------------------------

Treatment

-start Hydration and Alkalinization
-Allopurinol Vs Rasburicase based on Uric Acid level
-DIC start ATRA no matter what
-start Antibiotic, antiViral and antifunga Coverages NOW
-Consider Fertility Issue now
-speak to family
and start Induction
and consider consolidation based on circumstances per standard of care


In elderly >65,   or >60 with significant comorbidity
Death occurs during induction
so please consider
1.LOW DOSE ARAC-C
2. 5-AZACYTIDINE
3. DECITABINE
4. CLOFARABINE
5. FOR 5q- TRY REVLIMID!
-----------------------these are my notes------------

MA-27 NO SUPERIORITY OF AROMASINE OVER ARIMIDEX IN ADJUVANT SETTING

MA-27
NO SUPERIORITY OF AROMASINE OVER ARIMIDEX IN ADJUVANT SETTING.
NO SUPERIORITY EXTENDS EVEN TO BONE EFFECT FEARED TO BE WORSE WITH ARIMIDEX.
GOOD THING TO KNOW EVEN IF IT DOES NOT CHANGE PRACTICE!  IT IS JUST A GOOD THING TO KNOW AS WE TALK TO WOMEN WITH ER  POSITIVE BREAST CANCER.
THIS IS AN EXAMPLE OF A GOOD NEGATIVE STUDY.  IT HELPS CLEAR THE AIR!
GENES OF CELLULAR DEATH.

1.  BIM or BCL2-L11

BCL2L11

From Wikipedia, the free encyclopedia
Jump to: navigation, search
BCL2-like 11 (apoptosis facilitator)

Rendering based on PDB 2K7W.
Available structures
PDB Ortholog search: PDBe, RCSB
Identifiers
Symbols BCL2L11; BAM; BIM; BOD
External IDs OMIM603827 MGI1197519 HomoloGene7643 ChEMBL: 5777 GeneCards: BCL2L11 Gene
RNA expression pattern
PBB GE BCL2L11 208536 s at tn.png
PBB GE BCL2L11 222343 at tn.png
More reference expression data
Orthologs
Species Human Mouse
Entrez 10018 12125
Ensembl ENSG00000153094 ENSMUSG00000027381
UniProt O43521 O54918
RefSeq (mRNA) NM_001204106.1 NM_009754.3
RefSeq (protein) NP_001191035.1 NP_033884.1
Location (UCSC) Chr 2:
111.88 – 111.92 Mb
Chr 2:
128.13 – 128.16 Mb

PubMed search [1] [2]
Bcl-2-like protein 11 is a protein that in humans is encoded by the BCL2L11 gene.[1][2]
The protein encoded by this gene belongs to the BCL-2 protein family. BCL-2 family members form hetero- or homodimers and act as anti- or pro-apoptotic regulators that are involved in a wide variety of cellular activities. The protein encoded by this gene contains a Bcl-2 homology domain 3 (BH3). It has been shown to interact with other members of the BCL-2 protein family, including BCL2, BCL2L1/BCL-X(L), and MCL1, and to act as an apoptotic activator. The expression of this gene can be induced by nerve growth factor (NGF), as well as by the forkhead transcription factor FKHR-L1, which suggests a role of this gene in neuronal and lymphocyte apoptosis. Transgenic studies of the mouse counterpart suggested that this gene functions as an essential initiator of apoptosis in thymocyte-negative selection. Several alternatively spliced transcript variants of this gene have been identified.[3]
Interactions BCL2L11 has been shown to interact with DYNLL1,[4][5] MCL1,[1][6][7] BCL2-like 1,[1][2][6][8] BCL2L2[1][2] and Bcl-2.[1][2][6]
======================================================================================== 
COMMENTS:

BIM IS IN FACT CONSIDERED A MEMBER OF THE BCL FAMILY ONLY BECAUSE IT HAS A BH3
IN FACT AS STATED IT INITIATES APOPTOSIS.  IT ACTUALLY BINDS BCL FAMILY MEMBER AND DESACTIVATES THEM OR VICE VERSA.  MEANING THE MORE IT IT IS ATTACHED TO OTHER MEMBERS IF THERE IS ENOUGH BCL2 LEFT THE CELL IS PROTECTED.  BUT IF NOT, THE CELL IS OPEN TO DEATH.   IT IS DEGRADED THROUGH THE PROTEASOME.  IT IS THEREFORE UPREGULATED BY VELCADE.  TAXANE DOWNREGULATES BIM THEREFORE BIM IS PART OF TAXANE INEFFICIENCY LEADING RESEARCHER TO BELIEVE TO THE VALUE OF TAXANE VELCADE COMBINATION.

LEVEL OF BIM COULD THEREFORE BE A SURROGATE FOR MEASUREMENT ON WHETHER DRUGS ARE ADDITIVE  OR COUNTERPRODUCTIVE IN LABORATORY WHEN IT COMES TO THE CURE.

2. BID


3.BAD
4.NOXA
5.PUMA (HIDING BEHIND FOXO3 AND THE MTOR ALREADY DISCUSSED)
6.BH3 UPREGULATION
7.DEPRESSION OF Bcl-XL
8.BAX
9.Fas PLUS FASL FORM DISC
10.Death Receptor
SCIENCE DOES NOT BELONG TO ANY ONE:

One thing about Biological Sciences is that it does not care if you are rich or poor.  It just there to be discovered and understood.  Of course the more the observer, the more you can understand it.  But it is a function of what cards you are given, what chances you have and once in a while what luck you have.  Perseverance comes in handy so never give up.  And in research, no road should remain unturned because you just don't know where it may lead.  And no road should be left unchallenged.  Even a negative study established a fact suspected or unsuspected.  It warns to those who come after us not to repeat the mistake our predecessors made.

Basic principle are the same but cells have shown adaptation to the environment.  It got to since our environment is randomly and constantly changing, with at time coordinated progression.  The key is in the work, working hard and long leads to success whatever success means!
From a scientific point of view, life emerges from an incredible amount of chains of reactions which apparently are following a certain logic which makes the law of nature.  These reactions are contained within a controlled environment capable of migration, differentiation, proliferation, angiogenesis, embryogenesis and  energy production and consumption, senescence and programed death.

With the arrival of new stimuli created in the environment,  membrane receptors constantly expand the panoply of their ligands.  And cells solicit their NF-kB and C-jun to adapt and offer an adaption response.  The cell solicits it genes and creates  transcription factors to formulate and express the response.  When it potentials are exhausted, program death is initiated,  Death traps are hidden through out the cell from the membrane where are located Death Receptors, to the Cytosol where various caspases and capsaicins.  Cellular death can happen also with Necrosis and Anoikis. AUTOPHAGIA CAN KILL CELLS BUT MOST OF THE TIME IT IS PROTECTIVE, OCCURS WITH STRESS!

GENENTEC REPORTED ALSO!
"

Apoptotic pathways

Apoptosis is triggered through 2 signaling pathways2:
Intrinsic pathway

Extrinsic pathway

Intrinsic pathway

As its name suggests, the intrinsic, or mitochondrial, pathway is initiated from within the cell (Figure 3.1).3
This pathway is often activated in response to signals resulting from DNA damage, loss of cell-survival factors, or other types of severe cell stress. Normally, pro-apoptotic proteins are released from the mitochondria to activate caspase proteases and trigger apoptosis.3

Enlarge this image When these pro-apoptotic signals are not released, the cell cannot die.1 The intrinsic pathway hinges on the balance of activity between pro- and anti-apoptotic signals of the Bcl-2 family.14 Preclinical studies indicate that members of the Bcl-2 family regulate the permeability of the mitochondrial membrane and determine whether a pro- or anti-apoptotic signal will be released inside the cell.15
Research implies that in this cascade, the anti-apoptotic proteins (eg, Bcl-XL) antagonize Bax and Bak by binding to their BH3 domains. This antagonism is relieved by BH3-only, pro-apoptotic proteins (eg, BIM, BID, BAD, NOXA, PUMA), which alternately bind to anti-apoptotic proteins, like Bcl-XL. In normal cells, cellular stress would result in an upregulation of these BH3-only proteins in order to initiate apoptosis via the intrinsic apoptotic pathway.3
Currently, the intrinsic pathway is more widely implicated as a blockade to tumorigenesis.2

Extrinsic pathway

The extrinsic pathway begins outside the cell through activation of pro-apoptotic receptors on the cell surface. These are activated by molecules known as pro-apoptotic ligands.12
Preclinical studies show that ligand binding causes receptors to cluster and ultimately form a death-inducing signaling complex (DISC).12
Upon DISC activation, the extrinsic pathway has been seen to adopt the same effector caspase machinery as the intrinsic pathway.12"
  ==========================================

   WHATEVER YOU RESEARCH CURE OF CANCER MAINLY HAPPENS WHEN CANCER CELL DEATH OCCURS. KEEP YOU EYES ON THE BALL.

FDA WATCH LIST

4 Medications are back on the watch list of the FDA:
1. VIMPAT which could cause Neutropenia, meaning it has bone marrow suppression
2. Ampyra resported to cause Anaphylactic reaction
3. ARZERRA use can reactivate viral infections
4. Banana Boat sunscreen which can light up before it is dried on the skin if exposed to light 
(the manufacturer has pulled this one from the Market.)

Tuesday, February 12, 2013

FREE CPRIT/ CPRIT IS ON ITS WAY BACK !

We learned today that The Health and Human Services passed a preliminary bill suggesting measures that will offer a tighter Oversight at CPRIT.  The bill goes to the full chamber for approval.  CPRIT represents the largest opportunity for fight against cancer in Texas primarily, but also the United States given the sparsity of available funds for cancer research and PREVENTION.
In general chances to obtain a grant is around 10% in the United States according to professors at the University of Texas in El Paso (UTEP) .  According to the Audit conducted at CPRIT, the MD Anderson was reported to have received  42% of the approximated one billion so far distributed by CPRIT.  This money comes from all Texans.  Most of them will never see the doors of the MD Anderson when they will need care because they can not afford it!  In El Paso, when you are found with a rare cancer such as a liver Angiosarcoma found recently in a 38 year old woman with no health insurance.  Her chance to participate in a MD Anderson study is more likely  less than 10 percent also if that.  Likely enough, drug company are looking to provide some help for the Avastin we recommended as part of her treatment.
We are also currently fighting to locate funds for another man, also with lack of insurance with metastatic penile cancer with positive pathology in inguinal nodes.  For these patients the prospect of going to Houston, live in a hotel to take part to a trial and afford it, is non-existent despite their participation to CPRIT funding.
For these reason alone CPRIT should not continue the current pattern of funding.  El Paso has received 0.2% of funding so far despite being the 4th city in Texas.  A cry for fairness is being conveyed here at CRBCM.

We look at CPRIT for fair leadership, we look at CPRIT to save life today and more in the future.
Somebody at CPRIT answer the call and fund projects that will help here, today!  Help us put together programs and infrastructure to fight cancer today for a better tomorrow and for the Cure in EL Paso.  Not every one can afford the trip to Houston!
FDA APPROVED THE GENERIC DOXIL IN REPONSE TO SHORTAGE AND ITS CONSEQUENCES ON ONCOLOGY PRACTICES ACROSS THE UNITED STATES.
The Generic version is manufactured by SUN PHARMA GLOBAL FZE.
Shortage was first believed to be a commercial ploy to increase the price until it became real.   This approval will limit chances of new shortage and will help patients with Myeloma, Kaposi sarcoma and Ovarian Cancers who need this medication the most.
PLATELET DERIVED GROWTH FACTOR, A DEADLY MISNOMER
====================================================

By naming this compound PDGF, the scientist who described this cytokine not only picked the wrong name,
but also sent researchers on the wrong path to understanding just how important this growth factor is.  As a result, some people are probably dying because the emphasis brought by the name was not clearly defined.
First of all, PDGF does not come solely from Platelets alone. It is made by a number of cells including Muscle cells, Endothelial cells and even Macrophages.
And when you think of Platelets, Coagulation comes to mind, weakening of platelets and the like.  If this PDGF does this, it is at a strictly minimal or insignificant level.  The effect on Platelets is only mentioned by those who clearly have been fooled and kept looking for rare effects which eventually can be found.  This PDGF works on Mesenchymal cells since creation.  It participates in Embryogenesis, cell survival, proliferation, angiogenesis and differentiation. In adults, its main effect is on Fibroblast and Glial cells.
When you think Platelet, platelet Aggregation, adhesion and so forth.  PDGF kills by Fibrosis in cirrhosis of the liver and Pulmonary hypertension, one of the worse silent killers of our time.  Pulmonary Hypertension is a deadly killer because physicians don't know how to best monitor it.  AND BECAUSE WE CLEARLY DO NOT TREAT IT AGGRESSIVELY.  HOW MANY PHYSICIAN GIVE CIALIS TO THEIR PATIENT FOR PULMONARY HYPERTENSION?   If you raise your hand, you are my hero!
The point is that by misnaming the PDGF, people will assume Aspirin would be the more likely inhibitor.  Think again.  There are almost 20 inhibitors of PDGF listed on the SELLECHEM list.  Believe me it starts with Nexavar and Sutent. Aspirin is not on the list!
HOW MANY PEOPLE THINK OF NEXAVAR IN THEIR TREATMENT OF SCLERODERMA, A DISEASE KNOW TO HAVE PROMINENCE OF PDGF ACTIVITY?    HOW MANY ONCOLOGISTS GIVE GLEEVEC TO TREAT THEIR GLIOBLASTOMA.  (CLUE, AVASTIN IS INDICATED IN REFRACTORY BRAIN DISEASE-YOU THINK AVASTIN-ANGIOGENESIS, THINK NEXAVAR, TELLS SELLECHEM).

In a short study, 11 out of 12 GLIOBLASTOMAS had amplification of PDGF.  This is one of the drivers of GBM.  Forget Platelet, think Mesenchymal derived growth factor, and let us put the right emphasis on this Cytokine!

Monday, February 11, 2013

LBK1, A CONFUSING MARKER OF CANCER
===================================
In lung cancer, Harvard researchers have pushed us now to request a lengthy list of Markers in order to direct our treatment.  The many options of therapeutic interventions have to be selected more sharply as new Driver mutations are discovered and new Target therapy drugs are made available.  We made a summary of drugs and their relevant Driver Mutations in our previous blog. (KRAS, EGFR, ALK, HER-2, BRAF, ROS-1,RET, MEK-1,NRAS, MET etc. for Driver Mutations.....Medications included Erlotinib, Gefitinib, Herceptin, Lapatinib, Veramufenib, Cabozantinib, Crizotinib etc. - SEE OUR BLOG)

But for a while, 5 Mutations were mostly adopted: KRAS, BRAF, EGFR, ALK and LBK1.
The surprise choice of LBK1 has remained somewhat of a confusion. Because no one knows what to do with the information despite the fact that we know a bit about the gene.  In these days, any Mutation or suppressed gene is suspect and prognosis conclusions are down. Presence of Mutation at LBK1 is considered of poor prognosis.  But wait a second! Let me shake a bit this notion:

Where do we find LBK1 alteration?

In DCIS
and In Polyps
and in Hamartomas ( Peutz Jeggers) : These do not sound like invasive cancers to me!

The DCIS case: Clinicians have maintained that DCIS do not invade, and Lymph node biopsy is generally not performed in case of DCIS.  Malignant transformation occurs here at 1% a year.  So we need additional Mutations for DCIS to adopt a cancerous profile.

In Peuts Jeggers, despite the presence of LBK1 (STK-1), polyps take their time to transform.  There the patient could develop pancreatic cancers for sure, but only after additional mutated genes come to bear! And the likelihood of this is high since a number of known substrates have been recognized to interact with LBK1.

Through Wikipedia:

SUBSTRATES OF LBK1 INCLUDE:

1.   BRSK 1&2 --------Through these substrate, it insure Neuronal Polarity.  And control length of neurons.
                       I should come to cellular polarity in a bit!  But here also comes its power to organize Microtubules and could have implications on resistance vs sensitivity to Taxanes!

2.  MARK 1&2--------This is where it controls Apico-basal cell Polarity, it may be controlling the      popular topic of Flippase, Floppase and Scramblase.

3.  SIK 1,2 : Through this substrate and its co-activator TORC2, LBK1 finds its inhibitory effect on Gluconeogesis.

4. AMPK signal pathways which favor proteins formation and translation while blocking lipogenesis.  Metabolically, it favors Catalysis with generation of ATP while blocking reactions requiring consumption of ATP.  At the cellular membrane the exchange of phosphorylated groups drive GTPase.  Putting LBK1 center to pathways activation.  At the Mitochondrial Membrane this has even more of an impact.

5.  NUAK  1,&2  which regulate Apoptosis through P53.  It is speculated that the overall effect of LBK1 is naturally anti-tumor.  Its alteration stops Apoptosis.

6. In the Embryo, LBK1 has demonstrated a role in Angiogenesis.   MEK or VEGF interaction is assumed.

One speculated that chronic exposure to Insulin like growth factor stimulation, or Estrogenic stimulation or inflammation or chronic mechanical stimulation forces desensitization through SPRADD or other genes altering LBK1 leading to loss of polarity and linear arrangement of cells by dysfunctional adhesion leading to "benign tumorous formations called polyps.  Further alterations happen as abnormal genetic evolution occurs and progresses into a full blown Malignancy.

It is also believed that once malignant transformation happens, LBK1 functions could "amplify" then the transformation favoring cell migration.

Many questions remain to be solved when it comes to LBK1...


SPLICEOSOME MACHINERY AND MYELOID MALIGNANCIES
--------------------------------------------------------------------------
Spliceosome
From Wikipedia,
A spliceosome is a complex of snRNA and protein subunits that removes introns from a transcribed pre-mRNA (hnRNA) segment. This process is generally referred to as splicing.
-------------------------------------------------------------------------------
Spliceosome contains 300 different proteins and 5 RNAs (U1-6). making a very large complex.
-------------------------------------------------------------------------------------------------
In Myeliod Malignancies, Hamilton et al. reported that Spliceosomal Mutations had prognostic implications in patients undergoing Hematopoietic Cell Transplantation.

SF3B1  having the better survival in MDS patients while
Mutants in SRSF and U2AF1 had worse prognosis.  Transplant is more indicated in these!
-------------------------------------------------------------------------------------------------

WE DISCUSSED HOW SPLICING IS INCLUDED IN DIFFERENTIATION BECAUSE WHERE IT OCCURS DETERMINES THE LENGTH, NATURE AND MORPHOLOGY OF THE RESULTING PROTEINS.


Sunday, February 10, 2013

SHIFTING WAR FRONT AT CPRIT,  FOCUS ON THE "FOUNDATION"
----------------------------------------

The war at CPRIT has moved from CPRIT proper to its related Foundation.  The foundation had received from senators a request to disclose communications that occurred, and could incriminate Foundation officials in secret dealings with donors who happened to be from the CPRIT governing board and oversight committee, and  at the same token beneficiaries of CPRIT funds.  The request had been made under obligatory disclosure laws that rule Government agencies.The executive Director of the CPRIT Foundation argue that disclosure rule should not be enforced in this case because the funding of the foundation comes from donors who's communications is the target of the request.  It is a surprise a position since just few days back the foundation had released the list of its donors.  Speculation is that the consequences of that release made the Foundation rethink its strategy.

Senator Wendy Davis has filed reportedly the argument that since the CPRIT Foundation was created and mentioned  within the law that brought to life CPRIT proper, the Foundation is a public institution and should submit to the request for information disclosure law.  The District Attorney has 30 day to take a position on this matter by law.   All this is good for transparency at CPRIT but hold the program hostage!  FREE CPRIT IS WHAT WE ASK.   
STOP THIS TUG-O-WAR ROPE GAME IF THERE IS NOTHING TO HIDE!
,

Follow-up at SAN ANTONIO

Researcher from Vanderbilt, namely Justin M Balko submitted a report where they examined tissue from 81 women who had undergone Neoadjuvant chemotherapy, in their study, they examined 450 genes as opposed to the 180 reported earlier.
90% of of all patient had at least 1 aberration in 5 signal pathways
1- PI3K/MTOR (therefore opening the door to Afinitor and related agents)
2. DNA repair  (May be PARP will have a role here)
3. Ras/MAP kinase   (Anti Myc /MEK inhibitor)
4. Cell cycle division (May be the Histone Deacetylase transferase inhibitor)
5. Growth Factor (Interferon and Interleukins)

Most common Mutations were in
-P53  (role  of Vitamin D can be discussed here)
- MCL-1(found in 56% of tissue) and Myc, found in 36% (Histone deacyltransferase inhibitors here  but also role of anti-actin/anti-Microtubule/anti-calmodulin )

The finding of prominent MCL-1, a Bcl-2 member goes directly to basic resistance to chemotherapy and actually could be reactive or an expression of primary refractoriness to chemotherapy.
JAK-2 was found in 11% (JAK2 inhitors could be tried)

Amplification in the MEK (cabozantinib)
PIM-1 would bring to bear Inteferon and Interleukins as therapeutic drugs (watch out PIM1 is an indicator that cyclins are an important drivers as they affect STAT3,5

The corollary question is whether to give the target therapy in maintenance setting or at time of progression.

-------------------------------------------

Medications and MCL-1 comment suggested here were not part of the report.  We are working hard at CRBCM!

A New Way to Tackle Triple-Negative Breast Cancer?

Kathy D. Miller, MD, Carlos L. Arteaga, MD
Jan 03, 2013

Introductions

Kathy D. Miller, MD: Hello. I am Kathy Miller, Associate Professor of Medicine at the Indiana University School of Medicine in Indianapolis. This is Medscape Oncology Insights, coming to you from the 2012 San Antonio Breast Cancer Symposium. Joining me today is Dr. Carlos Arteaga, Associate Director for Clinical Research and Director of the Breast Cancer Program at the Vanderbilt Ingram Cancer Center at Vanderbilt University in Nashville. Welcome, Carlos.
Carlos L. Arteaga, MD: How are you?

Cleaning Up the Micrometastases

Dr. Miller: Thank you for taking the time to come. I am looking forward to talking with you about your profiling work on the genetic diversity found in triple-negative breast cancer. This was started by your group and Jennifer Pietenpol, but the work you are presenting here takes it to another level, looking at whether metastasis is best predicted by the primary or residual disease. Tell me how you did that study.[1]
Dr. Arteaga: We speculated that patients with residual tumors after neoadjuvant chemotherapy are drug-resistant and may harbor targetable alterations that mirror what is happening in their micrometastases. The standard of care is observation, but we know that these patients tend to have a bad prognosis. We should probably treat them with something, but we don't know what. They have completed neoadjuvant chemotherapy, and they have residual disease (which is a harbinger of high odds of recurrence), so we speculated that we should be able to find targetable lesions in that residual disease that may mirror what is happening in the micrometastasis. If so, we could be in a position to institute early adjuvant trials with targeted therapies to clean up that micrometastatic compartment and potentially change the natural history of recurrence of disease, curing some patients.
Dr. Miller: This is an idea that we have talked about a lot -- that one of the benefits of neoadjuvant therapy is allowing us to know how well that therapy works, specifically for a particular woman and her tumor. We have tended to focus on the successes; the patients who have a pathologic complete response do really well. That has always left us with this problem, that the patients who don't have a pathologic complete response -- particularly if they have aggressive disease histology -- have a very high risk for recurrence, and we don't have a clue clinically what to do about them. Could this give us a way to find therapies for those patients?

Getting an Early Jump on Residual Disease

Dr. Arteaga: That is precisely the purpose of this type of investigation. We still have to prove to ourselves and to everybody else that when those metastatic recurrences occur, they mirror the postchemotherapy residual disease better than the primary disease. I think that we are going to find that the metastatic recurrence, molecularly and by subtyping, resembles more that residual tumor.
We are at a point, at least in academic centers that have access to all these technologies, that we should be able to study these tumors in some depth. We already have examples that stem cell signatures are selected by chemotherapy.
There was a beautiful study from the MD Anderson Cancer Center[2] showing that in HER2-positive tumors after neoadjuvant chemotherapy, if HER2 status went from positive to negative, those tumors didn't do well. It suggested the possibility that this therapy had selected a HER2-negative compartment that would not benefit from adjuvant trastuzumab, if in fact it was reflective of the micrometastases in those patients.
Dr. Miller: I have seen some of the data from your work, which is a major tour de force with a large number of samples -- not just paired samples, but a triplet of samples.
Dr. Arteaga: We don't have those data yet. What we showed today was just the profiling of the postchemotherapy residual cancer in the breast. In some cases, we have the metastatic recurrences, and in many patients, we have the pretreatment tumors. We have to complete the triplet and the analysis of the triplets. That's in progress.

No Tumor Stays the Same

Dr. Miller: You would expect the postchemotherapy residual disease to look different from the primary disease in some ways.
Dr. Arteaga: It's always going to look different.
Dr. Miller: Is it going to look different because something actually changed in the tumor, or because there was tumor heterogeneity and the proportion of those different populations has shifted?
Dr. Arteaga: Both of those hypotheses can coexist; they are not mutually exclusive. Probably, both things are going on. There is tumor heterogeneity, and in addition, it's possible that for cells that don't die; the 4 months of therapeutic pressure may change them. So, both things could be going on.
Dr. Miller: Would it affect how you would proceed with that patient after her surgery?
Dr. Arteaga: We have to do more studies to confirm and to get more data that those metastatic recurrences share targetable alterations with the posttreatment residual disease. It would be interesting to know whether we are dealing with selection as a function of the heterogeneity or selection as a function of changing our tumor cell autonomous mechanisms, but that would be academic. If we can confirm that they are targetable lesions that are mirrored in the micrometastatic compartment and in the residual disease, we probably have enough evidence to act upon some of these therapeutic targets -- in randomized studies, of course.
Dr. Miller: Let me ask you about the complexity, because you are likely to find not just 1 or 2 potential targets, but a lot of alterations. Do you have any sense from the data so far how wide that complexity might be? How big a number of different therapies are we going to need?
Dr. Arteaga: That is a very good question. We screen for only 182 oncogenes and tumor suppressors. We found that there was not a single prominent lesion, except for p53 mutations, which as you know are not targetable. But 30%-40% of tumors had MCL1, which is a targetable antiapoptotic gene and Myc gene amplification. There were other lesions in the PI3 kinase pathway, alterations in different genes in the pathway.
We could be at a point eventually where we can lump types of alterations in a network and say, "Okay, I see alterations in the RAS/RAF/MAP kinase pathway; should I treat these patients with a Myc inhibitor, or a group of alterations in the PI3 kinase pathway, PI3 kinase, P10, AKT, et cetera, and lump them?" This is going to require collaboration -- multi-institutional studies that would allow us to start exploratory studies where we already have very deep information about the tumors we are treating.

Are Randomized Trials Possible?

Dr. Miller: I am going to ask you about the practicalities of those studies, because it's an intriguing idea to take advantage of what you learn about an individual patient's tumor. It has this alteration, so I will treat the patient with a drug targeting that alteration, but not all of those patients will have recurrence. Some of them live long, happy lives in that setting, although they are a high-risk group. With the complexity of the disease and the number of different mutations, how does that become a randomized study to find out whether those therapies had an impact?
Dr. Arteaga: I am not sure that it will be difficult in the following sense. We are not treating the patients who have a pathologic complete response, because we cannot generate data from them; there is no tissue to study. Some of these alterations are going to be associated with a very early recurrence.
For example, in our study, patients who have Myc gene amplification recurred very quickly. So I bet that you can put studies together; it will be multi-institutional studies where you group patients of the same genotype and do a randomized study. It will be a difficult discussion, but you can think of a 2:1 randomization of experimental therapy vs observation, and based on the natural history that we see in these recurrences, we may get an answer pretty soon as to whether we are making an impact. It won't be easy, but at least in these trials we have molecular information before we deploy it, and that's probably a departure from what we have done up to now.

Alter Neoadjuvant Therapy to Match the Tumor

Dr. Miller: Are there other ways in which this information could be helpful? Could you use that information to alter the patient's neoadjuvant therapy at the beginning instead of waiting until she has had standard therapy?
Dr. Arteaga: Absolutely. If those lesions are present in the primary tumor and they have not been eliminated by treatment, suggesting that they are associated with a drug-resistant population, you could deploy your experimental treatment in combination with chemotherapy up front. Of course, that would be another potential benefit of this exercise.
Dr. Miller: Carlos, you have given us a great view of the future. It's a complicated one, but one that has great potential to benefit our patients. We look forward to catching up with your work as it progresses.
Dr. Arteaga: Thank you.
Dr. Miller: Thank you for joining us, and thank you to our audience for joining us for this edition of Medscape Oncology Insights. This is Kathy Miller, signing off from the 2012 San Antonio Breast Cancer Symposium.
FROM MEDSCAPE, SHARING ONLY!

=====================================================================

COMMENT:

This research is an important one as it may open the door to knowledge to genetic pattern of resistant Breast cancers.  It will answer a critical question about what to do with residual cancers?
This question is a major one particularly when you give up front all the chemotherapy in Neoadjuvant setting and you still have a residual mass that the surgeon eventually removes.  Current recommendation is to proceed with Radiation and no further chemotherapy (Aromatase inhibitor or Tamoxifen in ER positive patient) and basically observe where the chips fall. (in triple negative patients).
By gaining insight into the nature of the residual disease, one may suggest additional intervention to offer to women with partial response after neoadjuvant chemotherapy.

Another important aspect discussed during the discussion is no notion of gene profile of the metastatic disease as it compares to the original presentation Vs the residual disease.  This flow of progression in the profile of the gene will be even more important because it will bring out the variation in gene profile with the genetic intervention.

suppose:

A would be the gene profile at presentation
B gene profile in the residual disease after neoadjuvant therapy
C gene profile at Metastasis

difference between A and B
--------------------------------
 could be induced by treatment but indeed could be a tumor evolution or both meaning evolution as affected or shaped by Chemotherapy intervention.  The nature of the chemotherapy becomes critical.  What agents were actually used.  We can even detect the pattern of changes imposed by which chemotherapy.

Difference between B and C
-------------------------------
will tell us the true evolution of tumor,
it will point to evanescent effect of chemotherapy, and therefore which gene changes are temporary, due to chemotherapy or fixed.
It will point to important genes that actually drive metastatic progression

Difference in A and C
--------------------------
will point to what gene where not affected by chemotherapy and establish refractoriness and persist despite intervention.  It may point to the soul of the cancer. if And C are completely different.  True evolution of cancer will be learned.

This exhaustive comparative evaluation point to the fragmentary nature of the study by DR Arteaga SINCE IT FOCUSED B ONLY.  It is a necessary step but clearly limited.  It also point to the importance of the interpretation of the results obtained or to be obtained at each step!

They are onto something for sure.  and 180 genes being looked at. that is impressive, and call for careful interpretation of results.  HOW THESE GENES WERE SELECTED FOR SCREENING AGAIN?
===================================================================

Follow-up at SAN ANTONIO

Researcher from Vanderbilt, namely Justin M Balko submitted a report where they examined tissue from 81 women who had undergone Neoadjuvant chemotherapy, in their study, they examined 450 genes as opposed to the 180 reported earlier.
90% of of all patient had at least 1 aberration in 5 signal pathways
1- PI3K/MTOR (therefore opening the door to Afinitor and related agents)
2. DNA repair  (May be PARP will have a role here)
3. Ras/MAP kinase   (Anti Myc /MEK inhibitor)
4. Cell cycle division (May be the Histone Deacetylase transferase inhibitor)
5. Growth Factor (Interferon and Interleukins)

Most common Mutations were in
-P53  (role  of Vitamin D can be discussed here)
- MCL-1(found in 56% of tissue) and Myc, found in 36% (Histone deacyltransferase inhibitors here  but also role of anti-actin/anti-Microtubule/anti-calmodulin )

The finding of prominent MCL-1, a Bcl-2 member goes directly to basic resistance to chemotherapy and actually could be reactive or an expression of primary refractoriness to chemotherapy.
JAK-2 was found in 11% (JAK2 inhitors could be tried)

The corollary question is whetehr to give the target therapy in maintenance setting or at time of progression.